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Publications

  • Expression of genes involved in phagocytosis in uncultured heterotrophic flagellates

    Labarre A., A. Obiol, S. Wilken, I. Forn and R. Massana

    2019

    Limn. and Oceanogr. Special issue “Linking metagenomics to aquatic microbial ecology and biogeochemical cycles”. In press.

  • Low-latitude zooplankton pigmentation plasticity in response to multiple threats

    Lee M., H. Zhang, Y.i Sha, A. Hegg , G. Ekelund Ugge , J. Vinterstare , M. Škerlep , V. Pärssinen , S. D. Herzog , C. Björnerås , R. Gollnisch , E. Johansson , N. Hu , P. A. Nilsson , K. Hulthén , K. Rengefors , R. B. Langerhans , C. Brönmark and L.-A. Hansson

    2019

    Royal Society Open Science. Vol. 6, Issue 7, 24 July 2019. DOI: 10.1098/rsos.190321

  • Assessing the viral content of uncultured picoeukaryotes in the global‐ocean by single cell genomics

    Castillo Y.M., J.-F. Mangot, L. F. Benites, R. Logares, M. Kuronishi, H. Ogata, O. Jaillon, R. Massana, M. Sebastián and D. Vaqué

    2019

    Molecular Ecology, August 2019. DOI: 10.1111/mec.15210

  • Single Cell Ecogenomics of The Smallest Photosynthetic Eukaryotes

    Benites L.F., N. Poulton, K. Labadie, M. Sieracki, N. Grimsley and G. Piganeau

    2019

    Philosophical Transactions of Royal Society B” – Special edition on “Single Cell Ecology“, in press

  • Combined cultivation and single-cell approaches to the phylogenomics of nucleariid amoebae, close relatives of Fungi

    Galindo L.J., G. Torruella, D. Moreira , Y. Eglit , A. G.B. Simpson , E. Völcker , S. Clauß and P. López García

    2019

    Philosophical Transactions of Royal Society B” – Special edition on “Single Cell Ecology“, in press

  • SINGLE CELL ECOLOGY

    Richards, T.A., R. Massana, S. Pagliara, and N. Hall

    2019

    Philosophical Transactions of Royal Society B” – Special edition on “Single Cell Ecology“, in press

  • A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades

    Mitsi K., A. S. Arroyo and I. Ruiz-Trillo

    2019

    Biol. Letters. Vol. 15, Issue 9, 4 September 2019. DOI: 10.1098/rsbl.2019.0182

  • Gene space completeness in complex plant genomes

    Van Bel, M., Bucchini, F., Vandepoele, K.

    2019

    Current Opinion in Plant Biology, 48, 9-17, April 2019. DOI: 10.1016/j.pbi.2019.01.001

  • Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems

    E. Sieracki, N. J. Poulton, O. Jaillon, P. Wincker, C. de Vargas, L. Rubinat-Ripoll, R. Stepanauskas, R. Logares & R. Massana

    2018

    Scientific Reports 9 April 2019. DOI: 10.1038/s41598-019-42487-1

  • Tutorial: guidelines for the experimental design of single-cell RNA sequencing studies

    Lafzi A., C. Moutinho, S. Picelli, and H. Heyn

    2018

    Nature Protocols. Vol. 13, pp. 2742-2757. DOI: 10.1038/s41596-018-0073-y

  • Identity Noise and Adipogenic Traits Characterize Dermal Fibroblast Aging

    Salzer M. C., A. Lafzi , A. Berenguer-Llergo , C. Youssif, A. Castellanos,G. Solanas, F. Oliveira Peixoto, C. Stephan-Otto Attolini, N. Prats, M. Aguilera, J. Martín-Caballero, H. Heyn, S. Aznar Benitah

    2018

    Cell. Vol. 175, Issue 6, 8 November 2018, pp. 1575-1590. DOI: 10.1016/j.cell.2018.10.012

  • Genome Analyses of theMicroalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage

    Krasovec M., E. Vancaester, S. Rombauts, F. Bucchini, S. Yau, C. Hemon, H. Lebredonchel, N. Grimsley, H. Moreau, S. Sanchez-Brosseau, K. Vandepoele, and G. Piganeau.

    2018

    Genome Biol Evol. Vol. 10, Issue 9, 1 September 2018, pp. 2347-2365. DOI: 10.1093/gbe/evy167

  • Evolutionary genomics of Metchnikovella incurvata (Metchnikovellidae), an early branching microsporidium

    Galindo, L. J., G. Torruella, D. Moreira, H. Timpano, G. Paskerova, A. Smirnov E. Nassonova, and  P. López-García.

    2018

    Genome Biol Evol. 2018 Sep 15. DOI: 10.1093/gbe/evy205

  • Comparative genomic analysis of the ‘pseudofungus’ Hyphochytrium catenoides

    Leonard, G., A. Labarre, D. S. Milner, A. Monier, D. Soanes, J. G. Wideman, F. Maguire, S. Stevens, D. Sain, X. Grau-Bové, A. Sebé-Pedrós, J. E. Stajich, K. Paszkiewicz, M. W. Brown, N. Hall, B. Wickstead, T. A. Richards

    2018

    Open Biol. 8: 170184. DOI: 10.1098/rsob.170184

  • Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

    Seeleuthner, Y., S. Mondy, V. Lombard, Q. Carradec, E. Pelletier, M. Wessner, J. Leconte, J.-F. Mangot, J. Poulain, K. Labadie, R. Logares, S. Sunagawa, V. de Berardinis, M. Salanoubat, C. Dimier, S. Kandels-Lewis, M. Picheral, S. Searson, Tara Oceans Coordinators, S. Pesant, N. Poulton, R. Stepanauskas, P. Bork, C. Bowler, P. Hingamp, M. B. Sullivan, D. Iudicone, R. Massana, J.-M. Aury, B. Henrissat, E. Karsenti, O. Jaillon, M. Sieracki, C. Vargas & P. Wincker

    2018

    Nature Communications 9, 310. DOI: 10.1038/s41467-017-02235-3

  • Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells

    Mangot, J.-F., R. Logares, P. Sánchez, F. Latorre, Y. Seeleuthner, S. Mondy, M.E. Sieracki, O. Jaillon, P. Wincker, C. de Vargas, and R. Massana.

    2017

    Sci. Rep. 7:41498. DOI: 10.1038/srep41498


This project has received funding from the European Union's horizon 2020 research and innovation programme
under the Marie Sklodowska-Curie Grant Agreement No 675752.

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