Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate
Massana, R., A. Labarre, D. López-Escardó, A. Obiol, F. Bucchini, T. Hackl, M. G. Fischer, K. Vandepoele, D. V. Tikhonenkov, F. Husnik and P. J. Keeling
2020
ISME Journal. DOI: 10.1038/s41396-020-00770-4
Ciliate diversity and distribution across horizontal and vertical scales in the open ocean
Canals, O., A. Obiol, I. Muhovic, D. Vaqué, R. Massana
2020
Accepted for publication in Molecular Ecology
Diverse alveolate infections of tadpoles, a new threat to frogs?
Chambouvet A., V. Smilansky, M. Jirků, M. Isidoro-Ayza, S. Itoiz, E. Derrelle, A. Monier, D. Gower, M. Wilkinson, M.J. Yabsley, J. Lukeš,, T.A. Richards
2020
PLoS Pathog 16(2):e1008107. DOI: 10.1371/journal.ppat.1008107
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds
Del Cortona A., C.J. Jackso, F. Bucchini, M. Van Bel, S. D’hondt, P. Škaloud, C.F. Delwiche, A.H. Knoll, J.A. Raven, H. Verbruggen, K. Vandepoele., O. De Clerck, and F. Leliaert
2020
PNAS 117 (5) 2551-2559. DOI: 10.1073/pnas.1910060117
Virus-host coexistence in phytoplankton through the genomic lens
Yau S., M. Krasovec, S. Rombauts, M. Groussin, L.F. Benites, E. Vancaester, J-M. Aury, E. Derelle, Y. Desdevises, M-L. Escande, N. Grimsley, J. Guy, H. Moreau, S. Sanchez-Brosseau, Y. van de Peer, K. Vandepoele, S. Gourbiere, G. Piganeau
2020
Science Advances 6 (14): eaay2587. DOI: 10.1126/sciadv.aay2587
Genome Resolved Biogeography of Mamiellales
Leconte J., L.F. Benites, T. Vannier, P. Wincker, G. Piganeau, and O. Jaillon
2020
Genes. 11(1), 66. DOI: 10.3390/genes11010066
Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina-Blastocystis Stramenopile Lineage
Yubuki N., L.J. Galindo, G. Reboul, P. López-García, M.W. Brown, N. Pollet, D. Moreira
2020
Mol Biol Evol., Vol. 37, Issue 3, March 2020, Pages 651–659. DOI: 10.1093/molbev/msz250
Benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects
Mereu E., A. Lafzi, C. Moutinho, C. Ziegenhain, D.J. MacCarthy, A. Alvarez, E. Batlle, Sagar, D. Grün, J.K. Lau, S.C. Boutet, C. Sanada, A. Ooi, R.C. Jones, K. Kaihara, C. Brampton, Y. Talaga, Y. Sasagawa, K. Tanaka, T. Hayashi, I. Nikaido, C. Fischer, S. Sauer, T. Trefzer, C. Conrad, X. Adiconis, L.T. Nguyen, A. Regev, J.Z. Levin, S. Parekh, A. Janjic, L.E. Wange, J.W. Bagnoli, W. Enard, M. Gut, R. Sandberg, I. Gut, O. Stegle, H. Heyn
2020
Nat Biotechnol. 38, 747–755. DOI: 10.1038/s41587-020-0469-4
PhyloMagnet: Fast and accurate profiling of short-read meta-omics data using gene-centric phylogenetics
Schön M.E., L. Eme, T.J.G. Ettema
2020
Bioinformatics, 36(6), 2020, 1718–1724. DOI: 10.1093/bioinformatics/btz799
Disentangling the mechanisms shaping the surface ocean microbiota
Logares R., I.M. Deutschmann, P.C. Junger, C.R. Giner, A.K. Krabberød, T.S.B. Schmidt, L. Rubinat-Ripoll, M. Mestre, G. Salazar, C. Ruiz-González, M. Sebastián, C. de Vargas, S.G. Acinas, C.M. Duarte, J.M. Gasol, R. Massana
2020
BMC Microbiome 8, 55. DOI: 10.1186/s40168-020-00827-8
Expression of genes involved in phagocytosis in uncultured heterotrophic flagellates
Labarre A., A. Obiol, S. Wilken, I. Forn and R. Massana
2020
Limn. and Oceanogr. Vol. 65, 149-160. Special issue “Linking metagenomics to aquatic microbial ecology and biogeochemical cycles”. DOI: 10.1002/lno.11379
Linking metagenomics to aquatic microbial ecology and biogeochemical cycles
Grossart, H-P. , R. Massana, K. D. McMahon, and D. A. Walsh
2019
Limn. and Oceanogr. Vol. 65, S2-S20. DOI: 10.1002/lno.11382
Assessing the viral content of uncultured picoeukaryotes in the global‐ocean by single cell genomics
Castillo Y.M., J.-F. Mangot, L. F. Benites, R. Logares, M. Kuronishi, H. Ogata, O. Jaillon, R. Massana, M. Sebastián and D. Vaqué
2019
Molecular Ecology 28 (18), 26 August 2019. DOI: 10.1111/mec.15210
Uncovering microbial inter-domain interactions in complex communities
Florenza J., M. Tamminen, S. Bertilsson
2019
Phil. Trans. R. Soc. B 374: 20190087. Special issue “Single Cell Ecology“. DOI: 10.1098/rstb.2019.0087
Single Cell Ecogenomics of The Smallest Photosynthetic Eukaryotes
Benites L.F., N. Poulton, K. Labadie, M. Sieracki, N. Grimsley and G. Piganeau
2019
Phil. Trans. R. Soc. B 374:20190089. Special issue “Single Cell Ecology”. DOI: 10.1098/rstb.2019.0089
Combined cultivation and single-cell approaches to the phylogenomics of nucleariid amoebae, close relatives of Fungi
Galindo L.J., G. Torruella, D. Moreira , Y. Eglit , A. G.B. Simpson , E. Völcker , S. Clauß and P. López García
2019
Phil. Trans. R. Soc. B 374: 20190094. Special issue “Single Cell Ecology”. DOI: 10.1098/rstb.2019.0094
SINGLE CELL ECOLOGY
Richards, T.A., R. Massana, S. Pagliara, and N. Hall
2019
Phil. Trans. R. Soc. B 374: 20190076. Special issue “Single Cell Ecology“. DOI: 10.1098/rstb.2019.0076
A global metabarcoding analysis expands molecular diversity of Platyhelminthes and reveals novel early-branching clades
Mitsi K., A. S. Arroyo and I. Ruiz-Trillo
2019
Biol. Letters. Vol. 15, Issue 9, 4 September 2019. DOI: 10.1098/rsbl.2019.0182
Gene space completeness in complex plant genomes
Van Bel, M., Bucchini, F., Vandepoele, K.
2019
Current Opinion in Plant Biology, 48, 9-17, April 2019. DOI: 10.1016/j.pbi.2019.01.001
Single cell genomics yields a wide diversity of small planktonic protists across major ocean ecosystems
Sieracki, E., N. J. Poulton, O. Jaillon, P. Wincker, C. de Vargas, L. Rubinat-Ripoll, R. Stepanauskas, R. Logares & R. Massana
2019
Scientific Reports 9:6025, 9 April 2019. DOI: 10.1038/s41598-019-42487-1
Genome Analyses of the Microalga Picochlorum Provide Insights into the Evolution of Thermotolerance in the Green Lineage
Krasovec M., E. Vancaester, S. Rombauts, F. Bucchini, S. Yau, C. Hemon, H. Lebredonchel, N. Grimsley, H. Moreau, S. Sanchez-Brosseau, K. Vandepoele, and G. Piganeau.
2018
Genome Biol Evol. Vol. 10, Issue 9, 1 September 2018, pp. 2347-2365. DOI: 10.1093/gbe/evy167
Evolutionary genomics of Metchnikovella incurvata (Metchnikovellidae), an early branching microsporidium
Galindo, L. J., G. Torruella, D. Moreira, H. Timpano, G. Paskerova, A. Smirnov E. Nassonova, and P. López-García.
2018
Genome Biol Evol. Vol. 10, Issue 10, October 2018, Pages 2736–2748. DOI: 10.1093/gbe/evy205
Comparative genomic analysis of the ‘pseudofungus’ Hyphochytrium catenoides
Leonard, G., A. Labarre, D. S. Milner, A. Monier, D. Soanes, J. G. Wideman, F. Maguire, S. Stevens, D. Sain, X. Grau-Bové, A. Sebé-Pedrós, J. E. Stajich, K. Paszkiewicz, M. W. Brown, N. Hall, B. Wickstead, T. A. Richards
2018
Open Biol. 8: 170184. DOI: 10.1098/rsob.170184
Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
Seeleuthner, Y., S. Mondy, V. Lombard, Q. Carradec, E. Pelletier, M. Wessner, J. Leconte, J.-F. Mangot, J. Poulain, K. Labadie, R. Logares, S. Sunagawa, V. de Berardinis, M. Salanoubat, C. Dimier, S. Kandels-Lewis, M. Picheral, S. Searson, Tara Oceans Coordinators, S. Pesant, N. Poulton, R. Stepanauskas, P. Bork, C. Bowler, P. Hingamp, M. B. Sullivan, D. Iudicone, R. Massana, J.-M. Aury, B. Henrissat, E. Karsenti, O. Jaillon, M. Sieracki, C. Vargas & P. Wincker
2018
Nature Communications 9, 310. DOI: 10.1038/s41467-017-02235-3
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells
Mangot, J.-F., R. Logares, P. Sánchez, F. Latorre, Y. Seeleuthner, S. Mondy, M.E. Sieracki, O. Jaillon, P. Wincker, C. de Vargas, and R. Massana
2017
Sci. Rep. 7:41498. DOI: 10.1038/srep41498
This project has received funding from the European Union's horizon 2020 research and innovation programme
under the Marie Sklodowska-Curie Grant Agreement No 675752.